File(s) under embargo
Reason: Some files belong to another research group
until file(s) become available
datasetposted on 07.02.2020 by Danila Voronov
Datasets usually provide raw data for analysis. This raw data often comes in spreadsheet form, but can be any collection of data, on which analysis can be performed.
Research data for the thesis: Voronov, Danila (2020): Evolution of a gene regulatory network controlling gut patterning: comparing upstream control and chromatin organization around xlox/pdx1 and cdx genes in sea urchin, sea star and amphioxus
These files represent data and results obtained during this thesis.
Bed files for B. lanceolatum are obtained from Dr Jose Luis Gómez-Skarmeta.
Genome sequence and annotation were obtained from the files associated with the B. lanceolatum genome publication (Marlétaz, F. et al., 2018. Amphioxus functional genomics and the origins of vertebrate gene regulation. Nature, 564(7734), pp.64–70.)
Genome fasta files and their respective annotations are attached to allow loading onto IGV or other browser. Sources of those files are stated in the thesis text body.