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Branchiostoma lanceolatum index.txt (0.71 kB)
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Bl_parahox_putative_CRMs.bed (0.28 kB)
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Bl_putative_CRMs.bed (1.15 MB)
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vertebrate_tf_motifs_Bl_parahox_putative_CRMs.bed (43.02 kB)
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combined replicate narrowPeak files from Dr JL Skarmeta Gomez and peak gene annotations-20200205T104811Z-001.zip (3.52 MB)
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genome and annotations-20200205T104848Z-001.zip (149.6 MB)
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Branchiostoma lanceolatum
Research data for the thesis: Voronov, Danila (2020): Evolution of a gene regulatory network controlling gut patterning: comparing upstream control and chromatin organization around xlox/pdx1 and cdx genes in sea urchin, sea star and amphioxus
These files represent data and results obtained during this thesis.
Bed files for B. lanceolatum are obtained from Dr Jose Luis Gómez-Skarmeta.
Genome sequence and annotation were obtained from the files associated with the B. lanceolatum genome publication (Marlétaz, F. et al., 2018. Amphioxus functional genomics and the origins of vertebrate gene regulation. Nature, 564(7734), pp.64–70.)
Genome fasta files and their respective annotations are attached to allow loading onto IGV or other browser. Sources of those files are stated in the thesis text body.
